Nicola Soranzo's homepage

e-mail: soranzo at sissa.it
tel.: +39 040 3787509
fax: +39 040 3787528

Curriculum Vitae

Research interests

My research interests concern systems biology (reverse engineering of gene regulatory networks, chemical reaction network theory, dynamical models) and bioinformatics (analysis of microarray data, pathway databases).

Publications

Journal papers

• G. Iacono, F. Ramezani, N. Soranzo and C. Altafini
  Determining the distance to monotonicity of a biological network: a graph-theoretical approach
  Accepted by IET Syst. Biol., 2009
• N. Soranzo and C. Altafini
  ERNEST: a toolbox for chemical reaction network theory
  Bioinformatics 25(21), pp. 2853-2854, 2009
• N. Soranzo, M. Zampieri, L. Farina and C. Altafini
  mRNA stability and the unfolding of gene expression in the long-period yeast metabolic cycle
  BMC Systems Biology 3:18, 2009
• M. Zampieri, N. Soranzo, D. Bianchini and C. Altafini
  Origin of Co-Expression Patterns in E.coli and S.cerevisiae Emerging from Reverse Engineering Algorithms
  PLoS ONE 3(8), e2981, 2008
• M. Zampieri, N. Soranzo and C. Altafini
  Discerning static and causal interactions in genome-wide reverse engineering problems
  Bioinformatics 24(13), pp. 1510-1515, 2008
• N. Soranzo, G. Bianconi and C. Altafini
  Comparing association network algorithms for reverse engineering of large-scale gene regulatory networks: synthetic versus real data
  Bioinformatics 23(13), pp. 1640-1647, 2007

Conference papers

• F. Ramezani, G. Iacono, N. Soranzo and C. Altafini
  On the distance to monotonicity of a biological network: a graph-theoretical approach
  Proc. of the European Control Conference 2009, Budapest, Hungary, August 2009 (accepted)
• M. Zampieri, N. Soranzo and C. Altafini
  Modeling the genome-wide transient response to stimuli in yeast: adaptation through integral feedback
  Proc. of the 47^th IEEE Conference on Decision and Control, Cancun, Mexico, December 2008
• N. Soranzo, M. Zampieri, D. Bianchini and C. Altafini
  Network inference from gene expression profiles: what “physical” network are we seeing?
  Proc. of FOSBE 2007, Stuttgart, Germany, 2007
• N. Soranzo, G. Bianconi and C. Altafini
  Linear and nonlinear methods for gene regulatory network inference
  Proc. of NOLCOS 2007, 7^th IFAC Symposium on Nonlinear Control Systems, Pretoria, South Africa, 2007