A. How to obtain the source code for the Beta-Gaussian
Model
The source code of the programme which implements the
Beta-Gaussian Model is made freely available for academic use. To
obtain the code (provided "as is", with no support!) please send an
e-mail request to michelet_at_sissa.it.
The details of the Beta Gaussian Model and its efficiency for
identify the large-scale structural changes induced in proteins by
thermal fluctuations are discussed in the following article:
C. Micheletti, P. Carloni and A. Maritan
Accurate and efficient description of protein vibrational
dynamics: comparing molecular dynamics and
Gaussian models
Proteins, 55, 635
(2004).
Abstract ,
Preprint full text (cond-mat archive).
B. Supplementary material to:
C. Micheletti, F. Seno and A. Maritan
Recurrent oligomers in proteins -
an optimal scheme reconciling accurate and concise backbone
representations in automated folding and design studies.
Proteins: Structure, Function and Genetics 40, 662-674,
(2000).
preprint
version from the cond-mat archive.,
C. Supplementary material to:
C. Micheletti, F. Seno, J. R. Banavar and A. Maritan
Learning effective amino acid interactions through iterative
stochastic techniques
Proteins 42, 422-431 (2001).
preprint
version from the cond-mat archive.
D. Illustrative
material for optimal packing in protein helices.
Original article on compact conformations of a thick polymer:
A. Maritan, C. Micheletti, A. Trovato and J. R. Banavar,
Optimal shapes of compact strings
Nature, 406 287-290 (2000).
Abstract ,
preprint
version from the cond-mat archive.
Last updated Mon Dec 17 10:58:37
GMT+1 2001